OBO Foundry dashboard analysis¶

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/tmp/ipykernel_1375/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           7
OWL/XML Syntax           2
OWL Functional Syntax    1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 10 17358.6 24751.431915 543.0 2744.75 8134.5 16089.50 81411.0
SubClassOf 10 2730.2 5045.760020 161.0 742.00 1255.5 1676.50 16960.0
Declaration 10 2651.9 5073.978396 113.0 637.50 1219.5 1614.75 16986.0
DisjointClasses 7 18.8 21.075526 0.0 0.25 18.5 23.50 64.0
SubAnnotationPropertyOf 6 5.3 6.832114 0.0 0.00 2.5 7.00 19.0
SubObjectPropertyOf 6 21.3 36.615267 0.0 0.00 4.0 14.75 90.0
TransitiveObjectProperty 5 4.0 5.374838 0.0 0.00 0.5 7.75 15.0
EquivalentClasses 4 5.2 8.638415 0.0 0.00 0.0 6.00 22.0
SymmetricObjectProperty 4 0.9 1.852926 0.0 0.00 0.0 1.00 6.0
DataPropertyRange 4 2.8 7.480345 0.0 0.00 0.0 1.00 24.0
ObjectPropertyRange 4 16.2 28.808949 0.0 0.00 0.0 17.50 87.0
ObjectPropertyDomain 4 17.4 30.844412 0.0 0.00 0.0 17.50 91.0
EquivalentObjectProperties 3 2.4 5.337498 0.0 0.00 0.0 2.25 17.0
InverseObjectProperties 3 7.2 12.726176 0.0 0.00 0.0 9.00 34.0
FunctionalObjectProperty 3 1.1 2.131770 0.0 0.00 0.0 0.75 6.0
ClassAssertion 3 4.3 8.590046 0.0 0.00 0.0 1.50 22.0
FunctionalDataProperty 3 2.3 5.165054 0.0 0.00 0.0 0.75 16.0
DataPropertyDomain 2 1.4 3.502380 0.0 0.00 0.0 0.00 11.0
AnnotationPropertyRangeOf 2 0.4 0.966092 0.0 0.00 0.0 0.00 3.0
AnnotationPropertyDomain 2 0.2 0.421637 0.0 0.00 0.0 0.00 1.0
IrrefexiveObjectProperty 2 0.5 1.269296 0.0 0.00 0.0 0.00 4.0
SubDataPropertyOf 2 1.2 3.457681 0.0 0.00 0.0 0.00 11.0
DifferentIndividuals 1 0.2 0.632456 0.0 0.00 0.0 0.00 2.0
ObjectPropertyAssertion 1 0.2 0.632456 0.0 0.00 0.0 0.00 2.0
ReflexiveObjectProperty 1 0.9 2.846050 0.0 0.00 0.0 0.00 9.0
SubPropertyChainOf 1 1.5 4.743416 0.0 0.00 0.0 0.00 15.0
AsymmetricObjectProperty 1 0.6 1.897367 0.0 0.00 0.0 0.00 6.0
InverseFunctionalObjectProperty 1 0.2 0.632456 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 10 8094.3 15156.768917 421.0 2130.5 3613.0 4920.00 50887.0
ObjectSomeValuesFrom 6 136.8 209.082546 0.0 0.0 72.5 136.75 656.0
ObjectAllValuesFrom 4 4.9 9.036346 0.0 0.0 0.0 6.75 29.0
ObjectUnionOf 4 5.6 13.099618 0.0 0.0 0.0 2.75 42.0
ObjectIntersectionOf 3 9.5 16.229260 0.0 0.0 0.0 15.00 43.0
ObjectMinCardinality 3 0.9 1.911951 0.0 0.0 0.0 0.75 6.0
DataMinCardinality 2 0.3 0.674949 0.0 0.0 0.0 0.00 2.0
DataSomeValuesFrom 2 2.7 8.192815 0.0 0.0 0.0 0.00 26.0
ObjectComplementOf 2 3.4 9.430447 0.0 0.0 0.0 0.00 30.0
ObjectExactCardinality 2 0.3 0.674949 0.0 0.0 0.0 0.00 2.0
ObjectOneOf 2 0.5 1.080123 0.0 0.0 0.0 0.00 3.0
DataExactCardinality 1 0.6 1.897367 0.0 0.0 0.0 0.00 6.0
ObjectMaxCardinality 1 0.1 0.316228 0.0 0.0 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
8 t4fs 0.370 0.926 0.0
4 mcro 0.370 0.924 0.0
1 bpdo 0.368 0.919 0.0
0 ado 0.368 0.919 0.0
6 proco 0.367 0.917 0.0
7 scho 0.360 0.900 0.0
9 vbo 0.352 0.880 0.0
2 cbo 0.350 0.875 0.0
5 ngbo 0.349 0.873 0.0
3 gombo 0.335 0.838 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 10.0 0.3589 0.011902 0.335 0.35050 0.3635 0.368 0.370
score_dash 10.0 0.8971 0.029396 0.838 0.87625 0.9085 0.919 0.926
score_impact 10.0 0.0000 0.000000 0.000 0.00000 0.0000 0.000 0.000

OBO dependency graph